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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
Assay category
37
DNA binding
Target of assay
23
transcription factor
14
histone
14
histone modification
12
chromatin remodeller
8
narrow histone mark
6
broad histone mark
4
RNA binding protein
1
recombinant protein
Date released
11
August, 2017
11
December, 2017
8
November, 2017
5
November, 2018
2
February, 2018
Available data
50
bam
50
bigWig
50
fastq
48
bed narrowPeak
25
bigBed narrowPeak
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
37
Homo sapiens
Biosample type
17
in vitro differentiated cells
13
cell line
tissue
5
primary cell
2
stem cell
Organ
13
liver
6
connective tissue
5
epithelium
4
pancreas
3
embryo
Project
37
AMP
Genome assembly (visualization)
37
hg19
35
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
37
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
month_released!
August, 2021
files.file_type!
bed broadPeak
biosample_type!
tissue
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
cell line
HepG2
13
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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