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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1363
total RNA-seq
1362
ChIP-seq
426
ATAC-seq
257
single cell RNA-seq
210
DNase-seq
86
RNA microarray
78
snATAC-seq
74
WGBS
51
pCHi-C
28
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
78
DNA accessibility
Date released
111
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
August, 2021
2
December, 2019
2
February, 2023
1
August, 2022
Available data
85
txt
27
fastq
21
zippedFastqFolder
2
tsv
1
bed bed3+
Organism
163
Homo sapiens
Biosample type
108
tissue
56
primary cell
Organ
84
bone element
11
pancreas
10
lung
8
blood
8
bodily fluid
2
kidney
1
epithelium
1
musculature of body
Project
88
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
88
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
Audit category:
84
inconsistent ontology term
31
audit script error
month_released!
August, 2021
biosample_type!
cell line
BIOSAMPLE
ASSAY
164 results
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RNA microarray
snATAC-seq
tissue
bone element
84
lung
10
islet of Langerhans
7
pancreas
4
kidney interstitium
1
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primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
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