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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
175
total RNA-seq
22
ATAC-seq
5
WGBS
4
DNase-seq
3
pCHi-C
3
small RNA-seq
2
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
530
DNA binding
179
Transcription
26
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
669
bam
597
bigWig
465
fastq
421
bed narrowPeak
356
bigBed narrowPeak
160
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hic
Organism
746
Homo sapiens
Biosample type
370
cell line
361
tissue
15
in vitro differentiated cells
primary cell
Organ
746
liver
640
connective tissue
596
pancreas
488
adipose tissue
265
brain
248
heart
193
blood vessel
193
vasculature
188
kidney
158
bone element
137
artery
122
limb
116
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
746
AMP
Genome assembly (visualization)
597
hg19
520
GRCh38
Lab
706
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
biosample_type!
primary cell
BIOSAMPLE
ASSAY
746 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
2
1
tissue
liver
145
167
20
3
2
1
1
1
1
1
right lobe of liver
10
3
1
1
2
2
in vitro differentiated cells
hepatocyte
15
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