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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
129
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
160
DNA binding
131
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
narrow histone mark
44
broad histone mark
39
transcription factor
30
control
11
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
62
August, 2017
August, 2021
37
February, 2018
34
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
237
bam
220
bigWig
124
fastq
124
tsv
90
bed narrowPeak
20
tagAlign
17
bigBed narrowPeak
15
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
335
Homo sapiens
Biosample type
2502
tissue
1079
primary cell
592
cell line
335
in vitro differentiated cells
8
stem cell
Organ
87
connective tissue
26
embryo
23
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
335
AMP
Genome assembly (visualization)
247
hg19
218
GRCh38
4
hg18
Lab
285
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
month_released!
August, 2021
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
335 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
16
4
1
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