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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
987
total RNA-seq
584
ChIP-seq
196
ATAC-seq
178
DNase-seq
86
RNA microarray
68
single cell RNA-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1071
Transcription
584
DNA binding
400
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2021
211
August, 2017
203
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
26
November, 2018
25
February, 2020
19
April, 2020
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1685
bam
1499
bigWig
977
tsv
647
bed narrowPeak
357
bigBed narrowPeak
332
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2221
Homo sapiens
Biosample type
2225
tissue
963
primary cell
600
cell line
303
in vitro differentiated cells
9
stem cell
Organ
526
connective tissue
467
adipose tissue
462
pancreas
336
liver
195
brain
161
kidney
158
bone element
144
heart
91
blood vessel
91
vasculature
88
limb
66
musculature of body
57
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2128
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1556
hg19
1533
GRCh38
Lab
2043
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
August, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2225 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
297
57
68
1
4
7
2
1
1
4
adipose tissue
382
2
3
3
1
liver
167
123
20
2
1
3
1
1
1
1
kidney
17
11
13
56
1
1
bone element
84
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