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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
1
single cell RNA-seq
Assay category
41
DNA binding
35
DNA accessibility
4
DNA methylation
4
Transcription
3
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
August, 2021
40
May, 2024
36
February, 2023
5
March, 2020
4
July, 2019
3
February, 2020
1
April, 2019
1
October, 2019
Available data
224
bigWig
bam
191
bed narrowPeak
94
bigBed narrowPeak
76
tsv
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
90
Homo sapiens
Biosample type
89
tissue
1
primary cell
Organ
253
pancreas
205
epithelium
93
bone element
90
heart
86
connective tissue
80
kidney
79
liver
54
eye
48
adipose tissue
45
vasculature
44
blood vessel
43
brain
39
musculature of body
37
artery
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
75
GRCh38
6
hg19
Lab
50
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
month_released!
August, 2021
files.file_type!
bam
files.file_type!!
bam
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
single cell RNA-seq
tissue
left cardiac atrium
40
coronary artery
35
1
heart left ventricle
1
1
1
1
2
heart
1
1
heart right ventricle
1
1
+ See 3 more…
primary cell
cardiac fibroblast
1
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