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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ATAC-seq
53
total RNA-seq
41
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
80
DNA accessibility
53
Transcription
47
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
50
February, 2023
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
November, 2020
3
October, 2019
3
October, 2022
August, 2021
2
March, 2020
1
November, 2019
Available data
bam
298
bigWig
257
fastq
tsv
148
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
18
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
194
Homo sapiens
Biosample type
158
primary cell
25
cell line
12
tissue
Organ
243
pancreas
195
epithelium
93
bone element
84
heart
82
connective tissue
76
liver
68
kidney
49
eye
45
adipose tissue
41
vasculature
40
blood vessel
36
musculature of body
35
artery
29
brain
19
lung
9
blood
9
bodily fluid
8
skeleton
5
limb
4
gonad
4
ovary
2
vein
1
bone marrow
1
embryo
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
146
HPAP
49
AMP
Genome assembly (visualization)
27
hg19
10
GRCh38
Lab
146
Klaus Kaestner, Upenn
43
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
25
inconsistent ontology term
4
audit script error
month_released!
August, 2021
files.file_type!
bam
tsv
BIOSAMPLE
ASSAY
195 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
25
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 9 more…
cell line
EndoC_BH1
17
1
6
1
tissue
pigmented layer of retina
12
See all biosamples
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