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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
241
ATAC-seq
94
total RNA-seq
86
RNA microarray
72
single cell RNA-seq
56
pCHi-C
30
snATAC-seq
28
Hi-C
21
RRBS
10
MeRIP-seq
10
WGBS
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
30
DNA accessibility
Date released
16
January, 2021
10
April, 2020
August, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
1
bed bed3+
1
txt
Organism
29
Homo sapiens
Biosample type
22
tissue
8
primary cell
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
1
musculature of body
Project
18
T1D
10
LungMap
2
AMP
Genome assembly (visualization)
1
hg19
Lab
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
2
AMP-T2D consortium
Audit category:
2
audit script error
month_released!
August, 2021
files.file_type!
bam
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
30 results
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snATAC-seq
tissue
lung
10
islet of Langerhans
7
pancreas
4
skeletal muscle tissue
1
primary cell
peripheral blood mononuclear cell
8
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