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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
20
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
single cell RNA-seq
Assay category
75
DNA binding
20
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
30
control
18
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
43
May, 2021
20
August, 2017
August, 2021
13
February, 2023
9
December, 2017
8
February, 2018
6
March, 2020
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
1
August, 2018
Available data
254
bam
bigWig
141
fastq
124
tsv
107
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
115
Homo sapiens
Biosample type
776
tissue
474
primary cell
118
cell line
115
in vitro differentiated cells
7
stem cell
Organ
38
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
115
AMP
Genome assembly (visualization)
31
hg19
12
GRCh38
Lab
73
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
month_released!
August, 2021
files.file_type!
bigWig
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
20
5
1
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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