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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
129
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
157
DNA binding
131
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
85
histone
85
histone modification
45
transcription factor
43
narrow histone mark
41
broad histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
126
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
26
February, 2021
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
237
bigWig
141
fastq
124
tsv
107
bed narrowPeak
23
bed bed3+
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
332
Homo sapiens
Biosample type
2270
tissue
988
primary cell
598
cell line
332
in vitro differentiated cells
10
stem cell
Organ
79
connective tissue
29
embryo
21
epithelium
15
liver
1
adipose tissue
1
heart
Project
332
AMP
Genome assembly (visualization)
259
hg19
230
GRCh38
4
hg18
Lab
282
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
August, 2021
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
332 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
5
7
1
cardiomyocytes
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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