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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
524
ChIP-seq
180
total RNA-seq
23
ATAC-seq
5
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
Assay category
524
DNA binding
184
Transcription
24
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
322
transcription factor
102
control
97
histone modification
96
histone
82
recombinant protein
56
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
312
November, 2017
194
May, 2020
63
December, 2017
51
August, 2017
50
November, 2018
40
May, 2022
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
677
bam
605
bigWig
465
fastq
424
bed narrowPeak
358
bigBed narrowPeak
165
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
743
Homo sapiens
Biosample type
366
cell line
355
tissue
15
in vitro differentiated cells
7
primary cell
Organ
913
pancreas
743
liver
654
connective tissue
499
epithelium
484
adipose tissue
271
heart
251
brain
216
vasculature
212
blood vessel
159
bone element
146
kidney
135
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
26
embryo
24
spleen
20
lung
19
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
743
AMP
Genome assembly (visualization)
594
hg19
520
GRCh38
Lab
703
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
files.file_type!
tar
bed bed3+
BIOSAMPLE
ASSAY
743 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
DNase-seq
single cell RNA-seq
cell line
HepG2
357
5
1
1
1
1
tissue
liver
142
167
20
3
1
1
1
1
1
right lobe of liver
10
3
1
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
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