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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
471
DNA binding
184
Transcription
29
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
324
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
56
RNA binding protein
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
305
November, 2017
167
May, 2020
56
December, 2017
53
November, 2018
41
August, 2017
40
May, 2022
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
5
October, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
629
bam
557
bigWig
446
fastq
377
bed narrowPeak
344
bigBed narrowPeak
165
tsv
57
bed broadPeak
57
bigBed broadPeak
44
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
697
Homo sapiens
Biosample type
360
cell line
317
tissue
10
in vitro differentiated cells
10
primary cell
Organ
869
pancreas
697
liver
646
connective tissue
478
adipose tissue
470
epithelium
261
heart
209
kidney
203
vasculature
198
blood vessel
169
brain
159
bone element
133
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
23
spleen
21
embryo
20
lung
18
ureter
16
skeleton
15
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
697
AMP
Genome assembly (visualization)
556
hg19
489
GRCh38
Lab
657
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
files.file_type!
tar
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
697 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
350
5
1
1
1
2
tissue
liver
103
167
20
2
3
1
1
1
1
1
right lobe of liver
8
3
1
2
1
2
in vitro differentiated cells
hepatocyte
10
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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