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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
single cell RNA-seq
2
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
15
Transcription
3
DNA accessibility
Date released
August, 2021
7
May, 2022
6
February, 2023
5
February, 2021
1
October, 2022
Available data
3131
bam
2890
bigWig
1608
bed narrowPeak
1347
fastq
1327
tsv
1018
bigBed narrowPeak
371
tagAlign
318
bed broadPeak
281
bigBed broadPeak
262
bed bed3+
153
zippedFastqFolder
34
bed bedMethyl
34
bigBed bedMethyl
19
txt
16
hic
14
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
Organism
18
Homo sapiens
Biosample type
16
tissue
2
in vitro differentiated cells
1
cell line
Organ
6
pancreas
5
kidney
4
bone element
4
skeleton
1
musculature of body
Project
19
AMP
Genome assembly (visualization)
3
hg19
Lab
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
6
audit script error
month_released!
August, 2021
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
19 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
cell line
MIN6
1
See all biosamples
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