Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ATAC-seq
59
single cell RNA-seq
37
ChIP-seq
37
total RNA-seq
20
snATAC-seq
10
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
100
Transcription
93
DNA accessibility
37
DNA binding
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
control
10
narrow histone mark
5
RNA binding protein
5
nucleotide modification
Date released
August, 2021
64
May, 2022
49
May, 2021
47
September, 2023
26
February, 2023
19
April, 2020
14
May, 2023
10
November, 2020
8
January, 2021
5
March, 2019
4
March, 2023
1
October, 2017
Available data
40
bed narrowPeak
29
bigWig
26
fastq
25
bam
9
txt
3
bed bedgraph
2
bed broadPeak
1
bedpe
1
hic
Organism
242
Homo sapiens
Biosample type
primary cell
182
tissue
50
in vitro differentiated cells
13
cell line
2
stem cell
Organ
67
pancreas
61
kidney
40
liver
19
lung
6
epithelium
1
thymus
Project
145
AMP
47
KPMP
32
T1D
19
LungMap
4
community
Genome assembly (visualization)
50
hg19
14
GRCh38
Lab
AMP-T2D consortium
104
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
month_released!
August, 2021
lab.title!
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
247 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
11
50
islet of Langerhans
34
11
6
4
1
liver
20
20
lung
9
10
pancreas
1
4
+ See 1 more…
in vitro differentiated cells
embryonic stem cell
6
37
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
cell line
EndoC_BH1
6
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download