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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
34
single cell RNA-seq
30
ATAC-seq
27
snATAC-seq
6
WGBS
Assay category
132
Transcription
57
DNA accessibility
6
DNA methylation
Date released
76
February, 2023
45
February, 2021
41
September, 2020
24
May, 2022
7
August, 2020
1
March, 2019
1
October, 2017
Available data
294
bigWig
205
bam
195
fastq
194
bed narrowPeak
153
zippedFastqFolder
102
tsv
84
tagAlign
9
txt
5
hic
3
bed bedgraph
3
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
1
bedpe
Organism
195
Homo sapiens
Biosample type
169
primary cell
26
tissue
Organ
95
pancreas
69
epithelium
Project
169
HPAP
26
AMP
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
month_released!
August, 2021
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
195 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
7
6
exocrine cell
39
pancreatic beta cell
11
3
tissue
islet of Langerhans
6
20
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