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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
114
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
153
DNA binding
116
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
82
histone
82
histone modification
49
transcription factor
41
broad histone mark
40
narrow histone mark
22
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
August, 2021
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
215
bam
206
bigWig
109
tsv
102
fastq
91
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
313
Homo sapiens
Biosample type
2508
tissue
1084
primary cell
618
cell line
313
in vitro differentiated cells
10
stem cell
Organ
93
connective tissue
24
epithelium
16
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
313
AMP
Genome assembly (visualization)
233
hg19
204
GRCh38
4
hg18
Lab
263
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
month_released!
August, 2021
February, 2018
BIOSAMPLE
ASSAY
313 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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