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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
56
total RNA-seq
44
ATAC-seq
9
DNase-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
56
Transcription
54
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
July, 2019
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
3
November, 2017
Available data
171
bam
140
bigWig
127
bed narrowPeak
79
bigBed narrowPeak
57
tsv
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
213
Homo sapiens
Biosample type
120
tissue
66
cell line
27
primary cell
Organ
936
pancreas
746
liver
661
connective tissue
505
epithelium
478
adipose tissue
268
brain
236
heart
218
vasculature
213
blood vessel
213
kidney
159
bone element
136
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
Genome assembly (visualization)
179
GRCh38
150
hg19
Lab
213
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
August, 2021
July, 2019
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
ascending aorta
16
1
1
aorta
13
1
1
1
thoracic aorta
16
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
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