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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
146
DNA binding
34
DNA accessibility
12
Transcription
Target of assay
143
histone
143
histone modification
97
narrow histone mark
46
broad histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
78
October, 2019
63
November, 2017
30
June, 2019
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
190
bam
189
bigWig
176
bed narrowPeak
101
bigBed narrowPeak
82
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
12
tsv
1
tagAlign bed3+
Organism
192
Homo sapiens
Biosample type
178
tissue
14
primary cell
Organ
634
pancreas
566
connective tissue
528
liver
424
adipose tissue
287
epithelium
251
heart
192
brain
152
vasculature
148
blood vessel
137
kidney
125
artery
91
limb
66
bone element
54
blood
54
bodily fluid
48
musculature of body
31
nerve
21
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
192
AMP
Genome assembly (visualization)
192
GRCh38
139
hg19
Lab
192
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
August, 2021
May, 2019
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
caudate nucleus
12
1
substantia nigra
12
middle frontal area 46
11
+ See 73 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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