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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
987
total RNA-seq
508
ChIP-seq
193
ATAC-seq
86
RNA microarray
68
single cell RNA-seq
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
14
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1071
Transcription
508
DNA binding
216
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
165
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
August, 2021
195
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
29
October, 2018
25
February, 2020
25
November, 2017
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1792
bam
1679
bigWig
977
tsv
827
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1963
Homo sapiens
Biosample type
1965
tissue
974
primary cell
335
in vitro differentiated cells
263
cell line
10
stem cell
Organ
536
connective tissue
477
adipose tissue
440
pancreas
312
liver
158
bone element
146
brain
127
heart
84
kidney
54
blood vessel
54
vasculature
53
eye
44
artery
43
musculature of body
37
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1868
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1261
hg19
1240
GRCh38
Lab
1743
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
month_released!
August, 2021
May, 2019
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
1965 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
297
71
68
4
7
2
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
1
bone element
84
kidney
9
11
56
1
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