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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
total RNA-seq
178
ChIP-seq
22
ATAC-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
184
Transcription
178
DNA binding
23
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
103
control
62
histone modification
61
histone
42
narrow histone mark
19
broad histone mark
13
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
194
May, 2020
66
November, 2017
48
August, 2017
40
May, 2022
August, 2021
13
December, 2017
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
November, 2018
1
December, 2018
1
February, 2020
Available data
677
bam
605
bigWig
465
fastq
424
bed narrowPeak
bigBed narrowPeak
165
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
398
Homo sapiens
Biosample type
312
tissue
77
cell line
8
primary cell
1
in vitro differentiated cells
Organ
850
pancreas
651
connective tissue
480
adipose tissue
441
epithelium
398
liver
201
heart
159
bone element
156
brain
136
vasculature
134
blood vessel
119
kidney
112
artery
55
eye
48
musculature of body
37
limb
29
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
398
AMP
Genome assembly (visualization)
253
hg19
202
GRCh38
Lab
358
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
August, 2021
May, 2019
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
398 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
167
107
20
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
5
67
1
1
1
2
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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