Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
Assay category
401
Transcription
73
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
August, 2021
1
March, 2020
1
May, 2023
Available data
437
bam
419
bigWig
401
tsv
41
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
482
Homo sapiens
Biosample type
479
tissue
2
primary cell
1
in vitro differentiated cells
Organ
753
pancreas
727
liver
647
connective tissue
482
adipose tissue
379
epithelium
249
brain
224
heart
172
vasculature
168
blood vessel
147
bone element
131
kidney
90
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
29
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
482
AMP
Genome assembly (visualization)
419
GRCh38
418
hg19
Lab
482
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
August, 2021
September, 2020
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
482 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
omental fat pad
5
11
1
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download