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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
107
ChIP-seq
2
ATAC-seq
Assay category
190
DNA accessibility
107
DNA binding
Target of assay
60
histone
60
histone modification
47
transcription factor
34
broad histone mark
26
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
172
June, 2019
66
November, 2017
40
August, 2017
8
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2588
bam
2399
bigWig
1550
bed narrowPeak
1057
fastq
956
bigBed narrowPeak
920
tsv
363
tagAlign
297
bed broadPeak
261
bigBed broadPeak
244
bed bed3+
104
txt
73
zippedFastqFolder
28
bed bedMethyl
28
bigBed bedMethyl
15
bedpe bed3+
15
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
291
Homo sapiens
Biosample type
210
tissue
59
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
adipose tissue
2
nerve
1
spleen
Project
297
AMP
Genome assembly (visualization)
279
hg19
260
GRCh38
Lab
295
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
August, 2021
organ_slims!
adipose tissue
epithelium
BIOSAMPLE
ASSAY
297 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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