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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
7
DNA accessibility
5
3D chromatin structure
5
Transcription
2
DNA methylation
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
21
October, 2019
8
July, 2019
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
1
February, 2020
Available data
78
bam
65
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
6
tsv
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
85
Homo sapiens
Biosample type
56
tissue
29
primary cell
Organ
942
pancreas
756
liver
679
connective tissue
518
epithelium
490
adipose tissue
286
brain
261
heart
230
vasculature
224
blood vessel
224
kidney
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
66
hg19
59
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
August, 2021
organ_slims!
artery
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
ascending aorta
16
1
2
thoracic aorta
16
2
1
aorta
13
1
1
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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