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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
980
total RNA-seq
801
ChIP-seq
188
ATAC-seq
142
DNase-seq
86
RNA microarray
68
single cell RNA-seq
26
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
11
RRBS
10
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1064
Transcription
801
DNA binding
356
DNA accessibility
37
DNA methylation
10
3D chromatin structure
Target of assay
544
histone modification
543
histone
294
narrow histone mark
249
broad histone mark
170
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
August, 2021
193
May, 2020
173
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1793
bam
1641
bigWig
970
tsv
788
bed narrowPeak
477
bigBed narrowPeak
377
fastq
238
tagAlign
177
bed broadPeak
169
bed bed3+
140
bigBed broadPeak
100
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2378
Homo sapiens
Biosample type
2386
tissue
1084
primary cell
618
cell line
352
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
503
pancreas
487
adipose tissue
361
liver
265
brain
181
heart
171
kidney
158
bone element
127
blood vessel
127
vasculature
limb
82
musculature of body
71
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2289
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1659
GRCh38
1658
hg19
Lab
2204
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2021
organ_slims!
limb
BIOSAMPLE
ASSAY
2386 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
297
70
68
1
4
7
1
2
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
27
11
13
56
1
1
bone element
84
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