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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
980
total RNA-seq
841
ChIP-seq
188
ATAC-seq
142
DNase-seq
86
RNA microarray
single cell RNA-seq
26
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
11
RRBS
10
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
996
Transcription
841
DNA binding
356
DNA accessibility
37
DNA methylation
10
3D chromatin structure
Target of assay
579
histone modification
578
histone
309
narrow histone mark
269
broad histone mark
170
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
533
February, 2021
284
August, 2017
193
May, 2020
173
October, 2019
131
June, 2019
August, 2021
120
July, 2018
108
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
65
May, 2022
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
23
October, 2017
22
February, 2020
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1793
bam
1681
bigWig
965
tsv
828
bed narrowPeak
477
bigBed narrowPeak
377
fastq
238
tagAlign
177
bed broadPeak
169
bed bed3+
140
bigBed broadPeak
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2350
Homo sapiens
Biosample type
2358
tissue
897
primary cell
618
cell line
350
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
503
pancreas
487
adipose tissue
360
liver
265
brain
220
heart
158
bone element
127
blood vessel
127
vasculature
limb
115
kidney
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2317
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1699
GRCh38
1658
hg19
Lab
2195
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
11
Katalin Susztak, Upenn
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2021
organ_slims!
limb
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
2358 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
297
70
68
1
4
7
1
2
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
3
1
1
1
1
bone element
84
bone tissue
58
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