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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
total RNA-seq
128
ChIP-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
131
Transcription
128
DNA binding
31
DNA accessibility
4
3D chromatin structure
Target of assay
98
histone
98
histone modification
49
broad histone mark
transcription factor
48
narrow histone mark
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
116
May, 2021
46
August, 2017
August, 2021
39
February, 2018
32
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
217
bam
200
bigWig
124
tsv
108
fastq
75
bed narrowPeak
17
bed bed3+
16
tagAlign
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
303
Homo sapiens
Biosample type
2449
tissue
1074
primary cell
303
in vitro differentiated cells
268
cell line
10
stem cell
Organ
71
connective tissue
26
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
303
AMP
Genome assembly (visualization)
227
hg19
198
GRCh38
4
hg18
Lab
265
AMP-T2D consortium
35
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
month_released!
August, 2021
organ_slims!
ovary
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
303 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
45
7
1
embryonic stem cell
7
28
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
15
1
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