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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
25
ChIP-seq
4
DNase-seq
Assay category
56
Transcription
49
DNA accessibility
25
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
35
February, 2023
21
October, 2019
3
July, 2019
3
May, 2019
August, 2021
2
February, 2020
2
June, 2019
Available data
93
bam
85
bigWig
74
bed narrowPeak
56
tsv
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
130
Homo sapiens
Biosample type
64
cell line
64
tissue
2
primary cell
Organ
889
pancreas
653
liver
644
connective tissue
489
epithelium
466
adipose tissue
255
brain
241
heart
212
kidney
208
vasculature
203
blood vessel
159
bone element
130
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
22
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
130
AMP-T2D consortium
month_released!
August, 2021
target.investigated_as!
control
BIOSAMPLE
ASSAY
130 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
8
4
tissue
coronary artery
1
36
3
2
tibial artery
1
1
18
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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