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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
68
total RNA-seq
22
ChIP-seq
12
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
68
Transcription
22
DNA binding
12
DNA accessibility
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
150
February, 2021
13
December, 2017
13
February, 2018
August, 2021
8
February, 2023
3
May, 2021
1
January, 2018
Available data
94
bam
88
txt
79
bigWig
64
tsv
27
fastq
22
bed narrowPeak
4
bed bed3
3
bed bed3+
Organism
188
Homo sapiens
Biosample type
158
tissue
29
in vitro differentiated cells
1
primary cell
Organ
942
pancreas
756
liver
679
connective tissue
518
epithelium
490
adipose tissue
286
brain
261
heart
230
vasculature
224
blood vessel
224
kidney
159
bone element
139
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
187
AMP
1
T1D
Genome assembly (visualization)
91
hg19
87
GRCh38
1
hg18
Lab
187
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
August, 2021
BIOSAMPLE
ASSAY
188 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
in vitro differentiated cells
pancreatic endoderm
4
18
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
megakaryocyte
1
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