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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
Assay category
412
DNA binding
162
Transcription
28
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
318
transcription factor
78
recombinant protein
77
histone modification
76
histone
54
RNA binding protein
48
narrow histone mark
28
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
20
August, 2017
20
May, 2022
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
Available data
600
bigWig
582
bam
420
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
39
tagAlign
10
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
Organism
607
Homo sapiens
Biosample type
315
cell line
268
tissue
14
in vitro differentiated cells
10
primary cell
Organ
658
pancreas
607
liver
585
connective tissue
426
adipose tissue
308
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
128
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
21
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
607
AMP
Genome assembly (visualization)
607
hg19
528
GRCh38
Lab
587
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
BIOSAMPLE
ASSAY
607 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2
308
5
1
1
tissue
liver
83
147
20
2
1
1
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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