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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
506
ChIP-seq
159
total RNA-seq
5
DNase-seq
3
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
506
DNA binding
162
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
326
transcription factor
100
control
82
recombinant protein
77
histone modification
76
histone
57
RNA binding protein
48
narrow histone mark
28
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
314
November, 2017
193
May, 2020
63
December, 2017
53
November, 2018
26
August, 2017
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
August, 2021
2
June, 2019
1
February, 2021
1
March, 2020
Available data
677
bam
605
bigWig
465
fastq
424
bed narrowPeak
358
bigBed narrowPeak
165
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
677
Homo sapiens
Biosample type
366
cell line
288
tissue
15
in vitro differentiated cells
8
primary cell
Organ
689
pancreas
677
liver
593
connective tissue
442
adipose tissue
313
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
28
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
677
AMP
Genome assembly (visualization)
582
hg19
528
GRCh38
Lab
677
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
BIOSAMPLE
ASSAY
677 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
359
5
1
1
tissue
liver
122
147
2
1
right lobe of liver
10
2
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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