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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
396
DNA binding
28
DNA accessibility
Target of assay
318
transcription factor
81
recombinant protein
75
histone modification
74
histone
55
RNA binding protein
47
narrow histone mark
27
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
677
bam
605
bigWig
465
fastq
424
bed narrowPeak
358
bigBed narrowPeak
165
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
424
Homo sapiens
Biosample type
294
cell line
113
tissue
14
in vitro differentiated cells
3
primary cell
Organ
424
liver
214
pancreas
203
brain
191
heart
148
epithelium
133
vasculature
129
blood vessel
119
kidney
92
limb
74
artery
73
connective tissue
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
424
AMP
Genome assembly (visualization)
420
hg19
364
GRCh38
Lab
404
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2021
BIOSAMPLE
ASSAY
424 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
293
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
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