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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
5
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
pCHi-C
Assay category
35
DNA binding
5
Transcription
3
DNA accessibility
Target of assay
24
histone
24
histone modification
16
broad histone mark
11
control
8
narrow histone mark
Date released
42
October, 2019
1
February, 2020
1
March, 2020
Available data
66
bam
47
bigWig
41
bed narrowPeak
39
bigBed narrowPeak
fastq
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
44
Homo sapiens
Biosample type
44
tissue
Organ
578
connective tissue
471
pancreas
446
adipose tissue
301
heart
291
liver
265
brain
261
epithelium
224
kidney
224
vasculature
221
blood vessel
159
bone element
139
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
5
gonad
5
ovary
2
embryo
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
31
GRCh38
31
hg19
Lab
44
AMP-T2D consortium
month_released!
August, 2021
files.file_type!
fastq
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
tibial nerve
35
5
2
1
spleen
1
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