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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
Assay category
56
Transcription
49
DNA accessibility
29
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
26
October, 2019
4
May, 2019
3
July, 2019
August, 2021
2
February, 2020
2
June, 2019
Available data
97
bam
80
bigWig
69
bed narrowPeak
56
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
134
Homo sapiens
Biosample type
70
tissue
62
cell line
2
primary cell
Organ
923
pancreas
639
connective tissue
509
epithelium
473
adipose tissue
429
liver
283
brain
249
heart
221
vasculature
216
blood vessel
214
kidney
159
bone element
134
artery
122
limb
96
musculature of body
60
eye
43
nerve
26
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
134
AMP-T2D consortium
month_released!
August, 2021
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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