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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
Assay category
232
DNA binding
Target of assay
232
histone
232
histone modification
121
broad histone mark
111
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
38
August, 2017
32
September, 2018
21
October, 2019
17
June, 2019
August, 2021
3
May, 2019
3
November, 2017
Available data
225
bigWig
211
bed narrowPeak
198
bam
95
tagAlign
73
fastq
45
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
Organism
232
Homo sapiens
Biosample type
532
tissue
232
primary cell
98
in vitro differentiated cells
35
cell line
2
stem cell
Organ
63
epithelium
58
pancreas
17
vasculature
16
blood vessel
15
vein
10
kidney
8
connective tissue
8
musculature of body
3
brain
heart
1
eye
Project
148
AMP
84
T1D
Genome assembly (visualization)
225
hg19
193
GRCh38
Lab
118
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2021
organ_slims!
heart
BIOSAMPLE
ASSAY
232 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
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