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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
17
total RNA-seq
4
small RNA-seq
2
pCHi-C
1
RRBS
Assay category
209
DNA binding
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
85
October, 2019
82
November, 2017
28
May, 2019
15
October, 2017
12
February, 2020
9
July, 2019
2
March, 2020
Available data
196
bam
172
bigWig
164
bed narrowPeak
118
tagAlign
88
bigBed narrowPeak
23
tsv
9
bed broadPeak
9
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
233
Homo sapiens
Biosample type
233
tissue
primary cell
Organ
751
liver
619
connective tissue
498
pancreas
481
adipose tissue
306
heart
233
brain
167
kidney
148
blood vessel
148
vasculature
146
bone element
90
artery
86
epithelium
78
limb
60
blood
60
bodily fluid
48
musculature of body
40
nerve
37
embryo
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
Genome assembly (visualization)
174
GRCh38
124
hg19
Lab
233
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
August, 2022
assay_slims!
DNA accessibility
biosample_type!
primary cell
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
total RNA-seq
small RNA-seq
pCHi-C
RRBS
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
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