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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
Assay category
DNA accessibility
77
DNA binding
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
13
August, 2017
Available data
2986
bam
2807
bigWig
1586
tsv
1315
bed narrowPeak
1256
fastq
791
bigBed narrowPeak
398
tagAlign
157
txt
112
bed broadPeak
93
zippedFastqFolder
77
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
77
Homo sapiens
Biosample type
58
cell line
19
primary cell
Organ
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
vein
Project
77
AMP
Genome assembly (visualization)
77
hg19
62
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2022
assay_slims!
DNA accessibility
organ_slims!
vein
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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