Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
27
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
2
ATAC-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
73
Transcription
27
DNA binding
8
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
200
May, 2022
169
February, 2023
162
August, 2017
145
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
122
August, 2021
106
October, 2019
56
September, 2020
47
September, 2023
43
March, 2020
29
October, 2018
25
July, 2019
22
February, 2020
19
April, 2020
18
May, 2019
17
December, 2017
16
January, 2021
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
6
June, 2019
5
April, 2019
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
August, 2022
1
September, 2018
Available data
57
txt
16
bed narrowPeak
16
bigWig
16
tsv
8
bam
8
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
121
Homo sapiens
Biosample type
73
tissue
36
cell line
12
in vitro differentiated cells
1
primary cell
Organ
heart
66
kidney
32
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
122
AMP
Genome assembly (visualization)
GRCh38
60
hg19
Lab
64
Katalin Susztak, Upenn
36
Bing Ren, UCSD
18
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
August, 2022
assembly!
GRCh38
organ_slims!
heart
BIOSAMPLE
ASSAY
122 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
ATAC-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
Download