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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ATAC-seq
73
total RNA-seq
47
WGBS
15
ChIP-seq
10
snATAC-seq
8
Hi-C
5
MeRIP-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
105
DNA accessibility
73
Transcription
49
DNA methylation
15
DNA binding
8
3D chromatin structure
Target of assay
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
104
May, 2022
56
February, 2023
17
May, 2021
16
September, 2020
15
August, 2017
8
January, 2021
8
March, 2020
6
February, 2021
5
November, 2020
4
August, 2021
4
July, 2018
4
October, 2019
3
March, 2019
3
October, 2022
2
July, 2019
2
November, 2019
August, 2022
1
February, 2020
1
November, 2018
Available data
86
fastq
80
zippedFastqFolder
28
bam
26
bed narrowPeak
12
bigWig
11
tsv
8
tagAlign
7
bed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
258
Homo sapiens
Biosample type
142
primary cell
91
tissue
26
cell line
Organ
259
pancreas
200
epithelium
153
liver
137
kidney
107
heart
93
bone element
84
connective tissue
54
eye
43
adipose tissue
41
brain
37
musculature of body
23
vasculature
22
blood vessel
20
lung
9
blood
9
bodily fluid
9
limb
8
skeleton
8
vein
5
gonad
5
ovary
4
artery
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
142
HPAP
89
AMP
28
T1D
Genome assembly (visualization)
656
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
56
AMP-T2D consortium
51
Kyle Gaulton, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
24
inconsistent ontology term
3
audit script error
month_released!
August, 2022
assembly!
GRCh38
target.investigated_as!
control
BIOSAMPLE
ASSAY
259 results
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ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
Hi-C
MeRIP-seq
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
36
18
14
6
3
2
1
1
pancreas
1
4
1
1
1
1
body of pancreas
1
cell line
EndoC_BH1
18
1
3
2
1
Panc1
1
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