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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
65
ChIP-seq
2
ATAC-seq
Assay category
65
DNA binding
2
DNA accessibility
Target of assay
65
histone
65
histone modification
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
37
August, 2017
23
November, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
2698
bam
2464
bigWig
1600
tsv
1139
bed narrowPeak
892
fastq
428
bigBed narrowPeak
389
tagAlign
161
txt
153
zippedFastqFolder
67
bed broadPeak
64
xls
50
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
30
bigBed broadPeak
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
61
Homo sapiens
Biosample type
37
tissue
16
primary cell
14
cell line
Organ
14
liver
14
pancreas
13
musculature of body
12
brain
4
epithelium
4
vasculature
3
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
67
AMP
Genome assembly (visualization)
66
hg19
41
GRCh38
Lab
65
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
month_released!
August, 2022
assay_title!
DNase-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
11
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
cell line
HepG2
14
See all biosamples
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