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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
595
ChIP-seq
ATAC-seq
177
DNase-seq
4
FAIRE-seq
Assay category
595
DNA binding
181
DNA accessibility
Target of assay
520
histone modification
519
histone
266
narrow histone mark
253
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
149
October, 2019
93
May, 2019
65
April, 2019
64
August, 2017
58
November, 2017
45
October, 2018
40
May, 2024
36
December, 2017
27
May, 2020
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
2
March, 2020
Available data
1843
bam
1729
bigWig
1075
tsv
776
bed narrowPeak
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
770
Homo sapiens
Biosample type
776
tissue
394
cell line
256
primary cell
111
in vitro differentiated cells
2
stem cell
Organ
192
brain
134
heart
92
liver
89
kidney
84
limb
82
pancreas
62
blood vessel
62
vasculature
51
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
9
adipose tissue
9
connective tissue
3
eye
1
pituitary gland
Project
774
AMP
2
T1D
Genome assembly (visualization)
741
GRCh38
668
hg19
Lab
736
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
August, 2022
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
776 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
liver
82
2
left cardiac atrium
40
1
kidney
20
13
1
heart left ventricle
29
3
body of pancreas
26
4
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