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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
23
ATAC-seq
1
DNase-seq
Assay category
110
DNA binding
24
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
43
August, 2017
34
December, 2017
25
August, 2021
16
February, 2018
5
May, 2021
5
November, 2019
4
October, 2019
2
February, 2023
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
985
tissue
404
cell line
295
primary cell
134
in vitro differentiated cells
2
stem cell
Organ
47
connective tissue
18
epithelium
14
embryo
14
liver
2
pancreas
Project
134
AMP
Genome assembly (visualization)
133
hg19
128
GRCh38
Lab
130
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
17
inconsistent control read length
month_released!
August, 2022
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
42
3
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
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