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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
17
Hi-C
3
pCHi-C
Assay category
64
DNA accessibility
17
3D chromatin structure
Date released
66
August, 2021
12
March, 2020
3
October, 2019
2
November, 2019
1
August, 2018
Available data
3206
bam
2973
bigWig
1729
bed narrowPeak
1496
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
84
Homo sapiens
Biosample type
74
tissue
7
in vitro differentiated cells
2
cell line
1
primary cell
Organ
64
kidney
4
pancreas
3
heart
2
blood vessel
2
epithelium
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
84
AMP
3
HPAP
Genome assembly (visualization)
64
GRCh38
18
hg19
Lab
64
Katalin Susztak, Upenn
18
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
month_released!
August, 2022
BIOSAMPLE
ASSAY
84 results
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ATAC-seq
Hi-C
pCHi-C
tissue
kidney
64
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
primary cell
endothelial cell of umbilical vein
1
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