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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
20
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
4
total RNA-seq
2
Capture-C
2
single cell RNA-seq
Assay category
41
DNA binding
20
DNA accessibility
6
Transcription
4
3D chromatin structure
Target of assay
27
control
14
histone
14
histone modification
9
broad histone mark
5
narrow histone mark
Date released
19
August, 2017
16
February, 2023
12
August, 2021
8
February, 2018
6
March, 2020
5
December, 2017
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
1
May, 2021
Available data
26
bam
23
fastq
22
tagAlign
11
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
bed narrowPeak
4
hic
4
tsv
3
txt
2
bigBed narrowPeak
2
ibed
Organism
82
Homo sapiens
Biosample type
865
tissue
493
primary cell
193
cell line
82
in vitro differentiated cells
7
stem cell
Organ
43
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
82
AMP
Genome assembly (visualization)
292
hg19
GRCh38
4
hg18
Lab
75
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
16
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
month_released!
August, 2022
lab.title!
Kyle Gaulton, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
total RNA-seq
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
19
8
1
1
neural progenitor cell
8
cardiomyocytes (cardiac muscle cell)
2
2
2
pancreatic endoderm
5
1
chondrocyte
5
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