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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
ChIP-seq
22
ATAC-seq
4
DNase-seq
Assay category
396
DNA binding
26
DNA accessibility
Target of assay
327
transcription factor
81
recombinant protein
66
histone modification
65
histone
54
RNA binding protein
44
narrow histone mark
22
chromatin remodeller
21
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
36
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
14
August, 2021
5
October, 2019
1
February, 2021
1
June, 2019
Available data
655
bam
598
bigWig
450
fastq
422
bed narrowPeak
343
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
422
Homo sapiens
Biosample type
308
cell line
113
tissue
1
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
422
AMP
Genome assembly (visualization)
418
hg19
348
GRCh38
Lab
388
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2022
organ_slims!
epithelium
BIOSAMPLE
ASSAY
422 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
primary cell
hepatic stellate cell
1
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