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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
7
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
12
July, 2019
7
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
406
bigWig
404
bam
401
tsv
7
fastq
5
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
416
Homo sapiens
Biosample type
414
tissue
2
primary cell
1
in vitro differentiated cells
Organ
662
pancreas
523
connective tissue
417
adipose tissue
329
epithelium
295
kidney
257
heart
238
liver
133
vasculature
131
blood vessel
107
artery
75
bone element
67
brain
56
eye
56
musculature of body
55
limb
20
lung
18
ureter
16
skeleton
13
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
417
AMP
Genome assembly (visualization)
406
hg19
405
GRCh38
Lab
417
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
December, 2017
assay_title!
ChIP-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
417 results
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total RNA-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
3
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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