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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
pCHi-C
1
FAIRE-seq
Assay category
47
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
28
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
12
February, 2020
9
October, 2017
8
October, 2019
6
July, 2019
3
May, 2019
1
February, 2023
Available data
36
tagAlign
28
bam
12
tsv
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
67
Homo sapiens
Biosample type
60
tissue
7
primary cell
Organ
310
pancreas
244
liver
227
epithelium
147
kidney
124
heart
113
connective tissue
92
bone element
67
brain
65
adipose tissue
51
eye
44
vasculature
42
blood vessel
42
musculature of body
26
limb
19
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
8
skeleton
8
spleen
4
embryo
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
67
AMP
Genome assembly (visualization)
GRCh38
164
hg19
Lab
67
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
December, 2017
assembly!
GRCh38
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
RRBS
FAIRE-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 19 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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