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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
total RNA-seq
85
single cell RNA-seq
73
ATAC-seq
70
ChIP-seq
66
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
196
Transcription
139
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
158
May, 2022
100
May, 2021
99
February, 2023
56
September, 2020
45
February, 2021
16
January, 2021
3
October, 2022
Available data
183
fastq
153
zippedFastqFolder
48
bed narrowPeak
40
bigWig
24
bam
6
tsv
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
477
Homo sapiens
Biosample type
373
primary cell
52
tissue
47
in vitro differentiated cells
5
cell line
Organ
193
pancreas
142
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
314
HPAP
107
AMP
56
T1D
Genome assembly (visualization)
241
hg19
GRCh38
Lab
1077
AMP-T2D consortium
314
Klaus Kaestner, Upenn
163
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
30
audit script error
1
inconsistent ontology term
month_released!
December, 2017
assembly!
GRCh38
BIOSAMPLE
ASSAY
477 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
22
31
1
pancreatic beta cell
11
13
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
37
cell line
EndoC_BH1
3
2
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