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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
total RNA-seq
107
ChIP-seq
20
ATAC-seq
3
WGBS
2
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
169
Transcription
107
DNA binding
22
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
65
histone modification
64
histone
42
narrow histone mark
34
control
22
broad histone mark
8
transcription factor
Date released
193
May, 2020
52
August, 2017
40
May, 2022
December, 2017
6
November, 2018
6
October, 2019
3
July, 2019
3
March, 2020
1
February, 2021
Available data
234
bam
223
bigWig
149
tsv
75
bed narrowPeak
70
tagAlign
33
fastq
11
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
304
Homo sapiens
Biosample type
304
tissue
Organ
304
liver
Project
304
AMP
Genome assembly (visualization)
226
hg19
196
GRCh38
Lab
264
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
inconsistent control read length
month_released!
December, 2017
BIOSAMPLE
ASSAY
304 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
liver
167
107
20
3
2
1
1
1
1
1
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