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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
859
ChIP-seq
Assay category
1227
Transcription
859
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
623
histone modification
622
histone
322
narrow histone mark
300
broad histone mark
173
control
63
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
674
bam
579
bigWig
559
bed narrowPeak
341
bigBed narrowPeak
238
tagAlign
172
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
852
Homo sapiens
Biosample type
859
tissue
484
cell line
279
primary cell
in vitro differentiated cells
Organ
209
brain
123
heart
117
pancreas
107
liver
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
857
AMP
2
T1D
Genome assembly (visualization)
554
GRCh38
493
hg19
Lab
819
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2017
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
859 results
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Clear Filters
ChIP-seq
tissue
liver
107
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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