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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
66
ChIP-seq
Assay category
205
DNA accessibility
66
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
51
November, 2017
14
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
3013
bam
2795
bigWig
1572
bed narrowPeak
1469
tsv
1129
fastq
958
bigBed narrowPeak
347
tagAlign
308
bed broadPeak
271
bigBed broadPeak
245
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
271
Homo sapiens
Biosample type
176
tissue
49
primary cell
46
cell line
in vitro differentiated cells
Organ
78
kidney
50
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
271
AMP
Genome assembly (visualization)
255
GRCh38
248
hg19
Lab
271
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
inconsistent control read length
1
inconsistent assembly
month_released!
December, 2017
biosample_type!
in vitro differentiated cells
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
271 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
cell line
HepG2
45
Panc1
1
See all biosamples
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